PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_13019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 23210.4 Da PI: 4.4198 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 5 | 29 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Iar+++ gRt++++k++w++yl MLOC_13019.1 5 RWSRIARHLP-GRTDNEVKNYWNSYL 29 6*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.899 | 1 | 33 | IPR017930 | Myb domain |
CDD | cd00167 | 2.11E-8 | 4 | 29 | No hit | No description |
SuperFamily | SSF46689 | 6.32E-9 | 4 | 34 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-13 | 4 | 30 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-8 | 5 | 29 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
LYYRRWSRIA RHLPGRTDNE VKNYWNSYLK KRVEGGKGAP NSPTPAAASS AADSDGSQSP 60 SPGEVISTVQ ERASRPSNSA GSSEPPHESS SADSSCLTVT EPPACRAYAP VAPKVMFADW 120 LNMDYIGGQM GAAAAAAPGP EAAGVVGAGA GVGAGGGGDH CQVMSQGSSA QVDGPPGVED 180 SLHGGFGDNG TCWEFLEQFD SMDQMQVGGG GGFCDLLSMT EFFALN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_13019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168350.1 | 4e-95 | transcription factor LAF1-like | ||||
TrEMBL | A0A287UCN7 | 1e-109 | A0A287UCN7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_13019.2 | 1e-160 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-11 | myb domain protein 19 |