PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_12999.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ARR-B | ||||||||
Protein Properties | Length: 233aa MW: 26519.5 Da PI: 5.4319 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 43.8 | 5.8e-14 | 190 | 232 | 1 | 44 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 k+r++Wt eL ++F+ea++++ G +k +Pk+ilelm+v+ Lt+e MLOC_12999.2 190 KTRVVWTIELQNKFLEAINKI-GLDKVVPKRILELMNVDYLTRE 232 68*******************.********************86 PP | |||||||
2 | Response_reg | 76.4 | 1e-25 | 15 | 123 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + +++l+ +l++ +y + + ++d++ al++l++ + +Dl+++D++mp+mdG++ll+ ir e +lp+i+++ +++ + + + Ga MLOC_12999.2 15 VLAVDDDCVCLKVLEAILRRCKY-NPTMVTDAKTALKMLRAGKqeFDLVITDVRMPDMDGFKLLQLIRLEM-DLPVIMLSVDCDKKAVMKGITHGAC 109 799********************.9999***********877777**********************9976.************************* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp++ +++ + MLOC_12999.2 110 DYLLKPVSTNDIKN 123 ********999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.17E-33 | 11 | 135 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.7E-39 | 12 | 136 | No hit | No description |
SMART | SM00448 | 4.0E-28 | 13 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.026 | 14 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.6E-23 | 15 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.13E-24 | 16 | 128 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 2.7E-39 | 171 | 187 | No hit | No description |
SuperFamily | SSF46689 | 3.85E-10 | 187 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 188 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-15 | 190 | 232 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAAMSEKKFP EGLRVLAVDD DCVCLKVLEA ILRRCKYNPT MVTDAKTALK MLRAGKQEFD 60 LVITDVRMPD MDGFKLLQLI RLEMDLPVIM LSVDCDKKAV MKGITHGACD YLLKPVSTND 120 IKNIWQHVEK RKNLEAISHI NNNNDHDYDI DDRVQPGTAA TRTDSENESN EGDGSNENEE 180 STHISITQKK TRVVWTIELQ NKFLEAINKI GLDKVVPKRI LELMNVDYLT RES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4hnq_A | 1e-13 | 13 | 122 | 5 | 116 | Chemotaxis protein CheY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_12999.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197192.1 | 1e-120 | two-component response regulator ARR12-like | ||||
Refseq | XP_020198970.1 | 1e-119 | two-component response regulator ORR24-like | ||||
Swissprot | Q67W50 | 3e-77 | ORR25_ORYSJ; Two-component response regulator ORR25 | ||||
TrEMBL | A0A287XYS5 | 1e-168 | A0A287XYS5_HORVV; Two-component response regulator | ||||
TrEMBL | M0UQ14 | 1e-168 | M0UQ14_HORVV; Two-component response regulator | ||||
STRING | MLOC_12999.1 | 1e-169 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-69 | response regulator 12 |