PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_12824.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GeBP

Protein Properties

Length: 520aa MW: 56232.9 Da PI: 5.4676

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12824.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	34.8	4.4e-11	173	259	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 r w+ eDe+ +L +l+ + +g+ +++ v +s++ k +k+++ eK+r LK +++k v++ g +k++d f+ls+++Wg MLOC_12824.2 173 RRWTAEDELKILEALVHHVKANGTR--PGAGELIAAVGGSLERKnCTKTEIYEKVRTLKLRYEKAVST---G--ALPEKDDDLRKFKLSEQVWG 259 67**************9999966..67899*****875389***************99...3..44567889999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-15	173	259	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MGRKRREPSP PPPPPPEEES SSEESSSAEE EEEEGAAEAT PTTQNPPSPS SAATADDADA 60 DSSDGSDEES SESGKIDAEA FELRQIASSN PPAAAASELE SDDHEPSPQG KGKKRAKAGA 120 DPSPSGKAKK AKAGAAEKAP SVLTPSSEGK KKRKAQPEKT TPWSKPEKPG HLRRWTAEDE 180 LKILEALVHH VKANGTRPGA GELIAAVGGS LERKNCTKTE IYEKVRTLKL RYEKAVSTGA 240 LPEKDDDLRK FKLSEQVWGE NAKQVAAATM AQNEAASSKS KKKGQTSKEK TEGYSKGGTV 300 KEDTTIAVDE NVGTSTELNK GQATEEKVDE DSKGRSSKKA RTADTPAKSR KRVNHKEELE 360 GDAKTGTAKE TVDTTAQNGG TSVRSKSGKS DKEKADEDAE SPTLKEDMAD TQNAVTLDLF 420 KKEGETHDEK MDTDANVKGT RKGFDELQKL YPNLTSFVEE IQAQHPCGET LKRVFEFIND 480 EKASALESKI KKQRVSELRM EMRRADTKKE VTNIFIGLLN

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MGRKRREPSP PPPPPPEEES SSEESSSAEE EEEEGAAEAT PTTQNPPSPS SAATADDADA  60
DSSDGSDEES SESGKIDAEA FELRQIASSN PPAAAASELE SDDHEPSPQG KGKKRAKAGA  120
DPSPSGKAKK AKAGAAEKAP SVLTPSSEGK KKRKAQPEKT TPWSKPEKPG HLRRWTAEDE  180
LKILEALVHH VKANGTRPGA GELIAAVGGS LERKNCTKTE IYEKVRTLKL RYEKAVSTGA  240
LPEKDDDLRK FKLSEQVWGE NAKQVAAATM AQNEAASSKS KKKGQTSKEK TEGYSKGGTV  300
KEDTTIAVDE NVGTSTELNK GQATEEKVDE DSKGRSSKKA RTADTPAKSR KRVNHKEELE  360
GDAKTGTAKE TVDTTAQNGG TSVRSKSGKS DKEKADEDAE SPTLKEDMAD TQNAVTLDLF  420
KKEGETHDEK MDTDANVKGT RKGFDELQKL YPNLTSFVEE IQAQHPCGET LKRVFEFIND  480
EKASALESKI KKQRVSELRM EMRRADTKKE VTNIFIGLLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	GKKRAKA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12824.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363553	0.0	AK363553.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193496.1	0.0	triadin-like
TrEMBL	F2DI35	0.0	F2DI35_HORVV; Predicted protein
STRING	MLOC_12824.3	0.0	(Hordeum vulgare)