PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_12609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 204aa MW: 23771.6 Da PI: 8.2125 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.6 | 7.6e-26 | 95 | 142 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF +pik AA eL+v+lT+LK++CR+ GI+RWPhRk+ksl MLOC_12609.1 95 LTFELVSQYFCMPIKRAAEELNVGLTILKKRCREIGIPRWPHRKVKSL 142 799*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.144 | 78 | 163 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-21 | 95 | 142 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MYLLQQWSFE YLLEDALFYP TQHLCGTSTT TATTQSCLLQ DEHELGDARL EVYIRSFLAA 60 LERNYHGGEK ELKGELGRDA GEKKHNRSEE KPFVLTFELV SQYFCMPIKR AAEELNVGLT 120 ILKKRCREIG IPRWPHRKVK SLETLIKNAQ ELGKPMIEVE MLQRKKKLIE ESPGHIELDE 180 ATMVLRQACF KEKFKRRRLM AIEG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 194 | 198 | KRRRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_12609.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756209.2 | 4e-59 | protein RKD1 | ||||
Swissprot | Q9FGD1 | 9e-32 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | M0UNP6 | 1e-148 | M0UNP6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_12609.1 | 1e-149 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66990.1 | 8e-34 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
---|---|---|---|
|