PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_12474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26410.9 Da PI: 4.8469 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.4e-09 | 8 | 31 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIa ++ gRt++++k++w+++ MLOC_12474.1 8 RWATIATHLE-GRTDNEIKNYWNTH 31 4*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.139 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-8 | 7 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 8 | 31 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-6 | 8 | 32 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-12 | 8 | 48 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MIFLVDVRWA TIATHLEGRT DNEIKNYWNT HIRKKLLRMG VDPVTHQQLP PDHHLDGASA 60 SLLPEALLWA AAAARLGGLD TGALRQAQLL QHLLHTIGSN NDATNLIANL AAANSVLNSS 120 SRIVPSHLLQ DQMNMLSGTN YLQPGYLCNT TSNFTEQDVV QQQLIKDMSP GTSTFEAAGP 180 ADQHCNTTAA FAARDVAPAV DMLPVQEFAG LMEPMELQLP NLCSLESDSF WKDLLEDGYR 240 L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_12474.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470090 | 4e-51 | AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds. | |||
GenBank | BT034484 | 4e-51 | BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169249.1 | 1e-121 | transcription factor MYB39-like | ||||
Refseq | XP_020198492.1 | 1e-121 | transcription factor MYB39-like | ||||
TrEMBL | M0UN64 | 1e-178 | M0UN64_HORVV; Uncharacterized protein | ||||
STRING | MLOC_12474.1 | 1e-179 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54230.1 | 2e-18 | myb domain protein 49 |