PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_1236.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-X1
Protein Properties Length: 764aa    MW: 82411.2 Da    PI: 7.9689
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_1236.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.91.6e-062643118
     zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                 CG+H Cq  CH+GpC++C
  MLOC_1236.1 26 CGNHVCQDVCHPGPCGEC 43
                 ****************** PP
2zf-NF-X122.32.9e-0784101118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG H+C+ +CHeG+CppC
  MLOC_1236.1  84 CGVHRCKVTCHEGECPPC 101
                  ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060083.16E-91659No hitNo description
SMARTSM004381.0E-42645IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-42643IPR000967Zinc finger, NF-X1-type
CDDcd060082.40E-1374122No hitNo description
SMARTSM004381.3E-484103IPR000967Zinc finger, NF-X1-type
PfamPF014223.9E-684101IPR000967Zinc finger, NF-X1-type
CDDcd060089.67E-8169221No hitNo description
SMARTSM004380.0043179198IPR000967Zinc finger, NF-X1-type
PfamPF014220.035179197IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49236254IPR000967Zinc finger, NF-X1-type
PfamPF0142291236252IPR000967Zinc finger, NF-X1-type
SMARTSM004380.053289324IPR000967Zinc finger, NF-X1-type
PfamPF014220.007289305IPR000967Zinc finger, NF-X1-type
PfamPF014222.7326352IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1333354IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MALKGKLSDK DGVFSCSEVC GHSLACGNHV CQDVCHPGPC GECELVPVKV ITCHCGKTRL  60
QEKRASCLDP IPTCDKVCDK RLPCGVHRCK VTCHEGECPP CLVRVEQRCR CGSSGQMVEC  120
YRASKEEFRC NKPCGRKKNC GRHRCSECCC PLSKPFAQHQ GDSMDPHFCQ IPCGKKLRCG  180
QHGCQHLCHS GHCDPCRETI FHDLTCACGR TSIPPPQPCG TPTPSCPHQC MVPQPCGHPA  240
SHQCHFGDCP PCVVPVTREC VGGHVMLRNI PCGSKDIRCN QPCGKNRQCG LHACARPCHP  300
APCDPPPANG EASSSSGGKV SCGQLCGVPR RECKHTCNAP CHPSSPCPDV RCEHRVTITC  360
SCGRITTTVP CSAGGAYNGD SAFDISVMQQ LPIPLQPVES NGKRVPLGQR KLCCDEECAK  420
MERKRVLAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE PKWVLAIEER CKFLVLGKTK  480
GNSSSNIKFH VFCHMMKDKR DAIRLIADRW KLSVQAVGWE PKRFITVHVT PKSKVPARVL  540
GSKPGVPVSA SHPYFDPMVD MDPRLVVAML DLPRDADVSS LVLRFGGECE LVWLNDKNAV  600
AVFSDPARAA TALRRLDYGS AYQGAAIFCP SSITQASVSS NVWVGAQRYG GLAAKSSANS  660
WKASLSEPDP SGDWTVLSHA SGSVWKRGDT AAQVMGSSNR WNALESDAAT SSGPTDKRKP  720
TLRTETGSSS SAPGAGSSAA PSAGQSVSKL QPDVEVEDWE ESCE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_1236.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605820.0AK360582.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121G13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150167.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_020150168.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM8AYN00.0M8AYN0_AEGTA; Transcriptional repressor NF-X1
STRINGMLOC_1236.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1