PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_12225.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GeBP

Protein Properties

Length: 275aa MW: 29306.4 Da PI: 5.0311

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12225.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.1	3.6e-11	4	53	48	97
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++sql+eK+rrL++K ++ ++++++g +p+ ++hd+++++l++++W+ MLOC_12225.1 4 PYTRSQLSEKLRRLRNKHRGVSARVARGLDPARLAPHDRDVLHLCSRLWD 53 5789*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-9	4	53	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MPQPYTRSQL SEKLRRLRNK HRGVSARVAR GLDPARLAPH DRDVLHLCSR LWDPASAATS 60 PFAATGASAG SSGNKRRRAN PAPPPLPDVP APSGDSNSHG CYWIGSSIPG AAASFPDDNC 120 GGGEDVMYLE QENGHHLYFD EDAAFVADGN LNGITLDGIA LEQAETMAVL TDAGDNGVVG 180 NDYVAPPNVV NNGVSSENGN CNVLLPRSSE HRMASSVLDV FEECLREAKA DGMGSGGSAE 240 ESELARRWRA QRIDELDVLS RRLRLIIEDA TAAGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12225.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373195	0.0	AK373195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023H08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194923.1	1e-139	probable transcription factor At3g04930
TrEMBL	A0A287N2S4	0.0	A0A287N2S4_HORVV; Uncharacterized protein
TrEMBL	F2EAM0	0.0	F2EAM0_HORVV; Predicted protein
STRING	MLOC_12225.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43