PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12004.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 329aa    MW: 35116.6 Da    PI: 6.6551
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12004.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-3499183183
           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec..eaesssssas 83 
                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++       +      +  e+++ +++++
  MLOC_12004.1  99 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRpeeappT------AepEPVAAEQMSE 183
                   689**************************************************************6543331......2222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-32101203IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615102160IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LKLEEDKNRL SKGLDPWSNP TAAATTSTLH YLLQEKERAQ AQAQLQIYHQ QGFGGYLHQH  60
RRQQQAAGEG ADGGSSGEST PVADALATAF GSGRIVRSAA GRKDRHSKVC TARGLRDRRV  120
RLAAHTAIRF YDVQDRLGYD RPSKAVDWLI RNAKAAIEEL PDRPEEAPPT AEPEPVAAEQ  180
MSEHVTSTSS YGFGNPGGVP GWPDHGQRMP SSTWHASDNN VGEGRGAGGN GDSYMFAGIP  240
ARQGLEQGHL FSSNGETLQS SAGWAASARA WLDPLAGIHQ PSAMSGQIGF SHLVGGGGGG  300
GFMGFLAPAA QRLQLQGEEE EGSDVMRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20107161155Putative transcription factor PCF6
5zkt_B4e-20107161155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594350.0AK359435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1096P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.11e-95transcription factor PCF7
SwissprotQ8LT057e-74PCF7_ORYSJ; Transcription factor PCF7
TrEMBLF2D6C30.0F2D6C3_HORVV; Predicted protein (Fragment)
STRINGMLOC_12004.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-31TCP family protein