PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_11838.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

LBD

Protein Properties

Length: 237aa MW: 24498.8 Da PI: 8.2176

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_11838.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.2	5.9e-29	17	118	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C++ C+l+p++ +++q +++ +++k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv Gavg++++++++l+++++ MLOC_11838.2 17 SCNGCRVLRKGCNDACMLRPCLlwiegADAQGHATIFAAKFFGRAGLMSFLTAVPESQRPAVFQSLLYEAAGRTINPVGGAVGLLWAGSWHLCEAAV 113 6*******************9999877889*************************************************************99 PP DUF260 93 elall 97 +++l+ MLOC_11838.2 114 QTVLR 118 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	18	No hit	No description
PROSITE profile	PS50891	18.173	16	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-25	17	116	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MRGSERAAVS TSTSGMSCNG CRVLRKGCND ACMLRPCLLW IEGADAQGHA TIFAAKFFGR 60 AGLMSFLTAV PESQRPAVFQ SLLYEAAGRT INPVGGAVGL LWAGSWHLCE AAVQTVLRGG 120 AIRPLPELAG GVPEGGVGGS DLFASSSRRA VVGCSTYSMA KRVTPRKTWA PEAASHHQEP 180 SCDLGLFLTP GSAAAAEGER RARRAGTPSM SSDGSVTTTA GAGADGDKEP ELLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_11838.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363859	0.0	AK363859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191646.1	1e-142	LOB domain-containing protein 37-like
Swissprot	Q9FN11	6e-66	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	F2DIZ1	1e-170	F2DIZ1_HORVV; Predicted protein
STRING	Traes_2BS_5DF7F4FEE.1	1e-142	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	9e-64	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]