PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11665.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 58aa    MW: 6726.63 Da    PI: 9.7476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11665.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.1e-061035123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  + Cp   Cg++F++ s L+ H r  H
  MLOC_11665.8 10 HMCPypECGRRFTQESKLRAHFRAqH 35
                  689999***************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-7136No hitNo description
Gene3DG3DSA:3.30.160.609.0E-9932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00771035IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0321035IPR007087Zinc finger, C2H2
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKFGA QNLGGPVMNP GVYSRVQT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11665.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569609e-55AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.12e-26uncharacterized zinc finger protein At4g06634 isoform X1
TrEMBLA0A3B6PLQ54e-26A0A3B6PLQ5_WHEAT; Uncharacterized protein
TrEMBLA0A3B6QGH24e-26A0A3B6QGH2_WHEAT; Uncharacterized protein
TrEMBLA0A446WCC94e-26A0A446WCC9_TRITD; Uncharacterized protein
TrEMBLA0A453NX683e-26A0A453NX68_AEGTS; Uncharacterized protein
STRINGTraes_6AL_BA6465E82.14e-26(Triticum aestivum)
STRINGTraes_6AL_BA6465E821.14e-26(Triticum aestivum)
STRINGTraes_6AL_BA6465E822.14e-26(Triticum aestivum)
STRINGTraes_6BL_CC009B78A.29e-26(Triticum aestivum)
STRINGTraes_6DL_F47CFC6D9.17e-26(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-09C2H2 family protein