PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11665.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 54aa    MW: 6323.19 Da    PI: 9.7476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11665.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-061035123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  + Cp   Cg++F++ s L+ H r  H
  MLOC_11665.5 10 HMCPypECGRRFTQESKLRAHFRAqH 35
                  689999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-7136No hitNo description
Gene3DG3DSA:3.30.160.607.6E-9932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00771035IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0321035IPR007087Zinc finger, C2H2
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKNLG GPVMNPGVYS RVQT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11665.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569604e-72AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149434.11e-24uncharacterized zinc finger protein At4g06634 isoform X2
TrEMBLF2CZA44e-26F2CZA4_HORVV; Predicted protein
STRINGMLOC_11665.69e-28(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-11C2H2 family protein