PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_11665.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22188.5 Da PI: 6.5086 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 10 | 35 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cg++F++ s L+ H r H MLOC_11665.4 10 HMCPypECGRRFTQESKLRAHFRAqH 35 689999***************99877 PP | |||||||
2 | zf-C2H2 | 17.8 | 9.1e-06 | 72 | 97 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + + + L+ H+++ H MLOC_11665.4 72 YVCPydGCGKAYIHEYKLNLHLKKeH 97 9**********************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0077 | 10 | 35 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.8E-8 | 10 | 32 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.032 | 10 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-6 | 12 | 35 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-9 | 64 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.71E-6 | 67 | 94 | No hit | No description |
PROSITE profile | PS50157 | 9.681 | 72 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0016 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKFGA QNLGGPVMNP GGPHNTLKSP 60 VTPPVPSADR PYVCPYDGCG KAYIHEYKLN LHLKKEHPNH YSNAGAQAGS SRGTVSKNSR 120 RSKPNLMTSM PLAKIPKRNG YTVPSSSVVT VPEEHQWPRK VLYEADSEET EEEGDNMEEG 180 GLGYRAGSGD DDDETEEEE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_11665.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK356960 | 0.0 | AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149431.1 | 1e-105 | uncharacterized zinc finger protein At4g06634 isoform X1 | ||||
TrEMBL | F2CZA4 | 1e-125 | F2CZA4_HORVV; Predicted protein | ||||
STRING | MLOC_11665.6 | 1e-128 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06634.3 | 2e-30 | C2H2 family protein |