PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11665.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 21785.1 Da PI: 6.5086 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 10 | 35 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cg++F++ s L+ H r H MLOC_11665.1 10 HMCPypECGRRFTQESKLRAHFRAqH 35 689999***************99877 PP | |||||||
2 | zf-C2H2 | 17.9 | 8.8e-06 | 68 | 93 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + + + L+ H+++ H MLOC_11665.1 68 YVCPydGCGKAYIHEYKLNLHLKKeH 93 9**********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.79E-6 | 1 | 36 | No hit | No description |
SMART | SM00355 | 0.0077 | 10 | 35 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-8 | 10 | 32 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.032 | 10 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-9 | 60 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.88E-6 | 63 | 91 | No hit | No description |
SMART | SM00355 | 0.0016 | 68 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 68 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 70 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKNLG GPVMNPGGPH NTLKSPVTPP 60 VPSADRPYVC PYDGCGKAYI HEYKLNLHLK KEHPNHYSNA GAQAGSSRGT VSKNSRRSKP 120 NLMTSMPLAK IPKRNGYTVP SSSVVTVPEE HQWPRKVLYE ADSEETEEEG DNMEEGGLGY 180 RAGSGDDDDE TEEEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11665.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356960 | 0.0 | AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149434.1 | 1e-103 | uncharacterized zinc finger protein At4g06634 isoform X2 | ||||
TrEMBL | F2CZA4 | 1e-140 | F2CZA4_HORVV; Predicted protein | ||||
STRING | MLOC_11665.6 | 1e-144 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 2e-32 | C2H2 family protein |