PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 155aa MW: 16666.9 Da PI: 10.6491 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00051 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg++F + L H +H MLOC_11626.1 46 YECRTCGRRFATFQALGGHRTSH 68 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 17.9 | 8.4e-06 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F+++ L H+r H MLOC_11626.1 96 HRCGTCGQAFPTRQALGGHMRGH 118 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.0E-10 | 45 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.77E-8 | 46 | 118 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.033 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.51 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 96 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.2E-7 | 96 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDVASADTRA PITFIELLRK LSSPAASSRV IGKNKWVQLQ AGGGAYECRT CGRRFATFQA 60 LGGHRTSHKR PRVRAHGLDL LLGARPGKAT APVQLHRCGT CGQAFPTRQA LGGHMRGHSQ 120 AVPAATWTET ATWSSTSCLS GQDDDADWPT LIQFI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11626.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152686.1 | 1e-67 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A3B6HWH6 | 2e-67 | A0A3B6HWH6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R0F4 | 2e-67 | A0A446R0F4_TRITD; Uncharacterized protein | ||||
STRING | MLOC_11626.1 | 1e-110 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-21 | C2H2 family protein |