PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11457.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 123aa MW: 13676.7 Da PI: 8.6968 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.7 | 3.1e-15 | 29 | 66 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++C+Ckks+Clk+YC Cfa+g++Cse C C+ C Nk MLOC_11457.2 29 CRTCSCKKSRCLKLYCVCFASGSHCSELCGCDPCYNKP 66 789*********************************96 PP | |||||||
2 | TCR | 25 | 3.8e-08 | 105 | 123 | 4 | 22 |
TCR 4 kgCnCkkskClkkYCeCfa 22 ++C+Ckks ClkkYC+C++ MLOC_11457.2 105 RKCTCKKSGCLKKYCDCYQ 123 79****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.2E-9 | 27 | 68 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 21.969 | 28 | 123 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.7E-11 | 30 | 65 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.0E-5 | 105 | 123 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
VWTAVSPPAE ANGSSDRRKK RKAEDGEGCR TCSCKKSRCL KLYCVCFASG SHCSELCGCD 60 PCYNKPIHGV QQNTPPGLPL QVVRTAEAGQ NSAEFARYQM DFFRRKCTCK KSGCLKKYCD 120 CYQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11457.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375408 | 0.0 | AK375408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3093G12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189112.1 | 7e-83 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A287QE89 | 3e-86 | A0A287QE89_HORVV; Uncharacterized protein | ||||
TrEMBL | F2EGY1 | 5e-85 | F2EGY1_HORVV; Predicted protein | ||||
STRING | MLOC_11457.1 | 3e-85 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-26 | TESMIN/TSO1-like CXC 2 |