PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11453.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HSF | ||||||||
Protein Properties | Length: 104aa MW: 11341.1 Da PI: 7.3857 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 68.4 | 1.6e-21 | 25 | 83 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 F+ k+y+++ d++++ l++w + +nsf+v d f++ +Lp +Fkh nf+SFvRQLn+Y MLOC_11453.2 25 FVAKTYQMVCDPRTDALVRWGKGNNSFLVPDVAGFSQLLLPCFFKHGNFSSFVRQLNTY 83 9********************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.5E-15 | 21 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-22 | 21 | 86 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-21 | 22 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-12 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.6E-17 | 25 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-12 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-12 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MDSLHTELAL GLIGCGHGDF QTAPFVAKTY QMVCDPRTDA LVRWGKGNNS FLVPDVAGFS 60 QLLLPCFFKH GNFSSFVRQL NTYVSTPILP SEASRAAVFC LVLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 5e-14 | 25 | 83 | 10 | 68 | Heat shock factor protein 1 |
5hdn_A | 5e-14 | 25 | 83 | 10 | 68 | Heat shock factor protein 1 |
5hdn_B | 5e-14 | 25 | 83 | 10 | 68 | Heat shock factor protein 1 |
5hdn_C | 5e-14 | 25 | 83 | 10 | 68 | Heat shock factor protein 1 |
5hdn_D | 5e-14 | 25 | 83 | 10 | 68 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11453.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-143 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162679.1 | 6e-53 | heat stress transcription factor C-1a-like | ||||
Swissprot | Q6VBA4 | 3e-45 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | A0A446NIG4 | 3e-67 | A0A446NIG4_TRITD; Uncharacterized protein | ||||
STRING | MLOC_11453.1 | 2e-55 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 8e-26 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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