PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11341.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 557aa    MW: 60473.3 Da    PI: 6.4173
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11341.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.3e-28133186155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v  Lt+e+v+SHLQkYRl
  MLOC_11341.3 133 KPRVVWSIELHRKFVAAVNQL-GIDKAVPKRILELMNVGKLTRENVASHLQKYRL 186
                   79*******************.********************************8 PP
2Response_reg31.96.7e-1215653109
                   CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   mp+mdG++ll+     e++lp+i+++ +ge   +l+ +  Ga d+l Kp+ +eel++
  MLOC_11341.3   1 MPDMDGFKLLELVGL-EMDLPVIMLSVNGETRSVLKGITHGACDYLLKPVRIEELRN 56 
                   9*********87754.558************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000721.5E-8156IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.4E-1321557IPR017053Response regulator B-type, plant
PROSITE profilePS5011023.759162IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.54E-12161No hitNo description
SuperFamilySSF521723.84E-15170IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-19169No hitNo description
PROSITE profilePS5129411.275130189IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-29130191IPR009057Homeodomain-like
SuperFamilySSF466891.25E-19131190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24133186IPR006447Myb domain, plants
PfamPF002493.3E-6135185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MPDMDGFKLL ELVGLEMDLP VIMLSVNGET RSVLKGITHG ACDYLLKPVR IEELRNVWQH  60
VVRRKFSNRE PNNLDFCKEI SKPPSADSYH RLGQATCDRS SDQNGRPSKK RKELHSEEED  120
EGEENDDAAA SRKPRVVWSI ELHRKFVAAV NQLGIDKAVP KRILELMNVG KLTRENVASH  180
LQKYRLYLRR LSAVASQQAS IAAAFGGRDP FLHMGAFEGL HSYHQPFAPS AALPSFNPHG  240
LLIGAGATAF ELQNFAASKA IQCASSNGAI GHCAGDTNKL NIVSLQGNQQ TDLMQGLTAS  300
SLGPPQLQQK WIHQEPNDLC SIFSGGALAN TMFGTLQRVT GSSLPLEDLL ECTPHIKVGA  360
HPSIGIQAVS PGLLERSVGV SADLRDSSMS QQGDLSISDG FSVDKLPLHI PFDDADTGFM  420
AREQVMDQEG IFSERMTVSV CPSESLIAAN NIKCGASSSG STMLLPPHET ERHSKYLQFG  480
SGSNSRHRMG GLRQDQCLDN GGFSYDGGAI VPEQTNMDDL GTPKLQGGLN SSSCNFDDLL  540
NSIIKVVRTP IMQSLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-24130192264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11341.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotB8B3I40.0ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A287VWJ50.0A0A287VWJ5_HORVV; Two-component response regulator
STRINGMLOC_11341.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-67response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]