PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11341.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 567aa    MW: 61675.7 Da    PI: 6.1719
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11341.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.5e-28143196155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v  Lt+e+v+SHLQkYRl
  MLOC_11341.2 143 KPRVVWSIELHRKFVAAVNQL-GIDKAVPKRILELMNVGKLTRENVASHLQKYRL 196
                   79*******************.********************************8 PP
2Response_reg46.52.1e-1626644109
                   ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  44 pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge   +l+ +  Ga d+l Kp+ +eel++
  MLOC_11341.2   2 FDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETRSVLKGITHGACDYLLKPVRIEELRN 66 
                   7******************87754.558************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.898172IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363923.4E-1411565IPR017053Response regulator B-type, plant
CDDcd001561.93E-17271No hitNo description
SuperFamilySSF521727.4E-21280IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.8E-25279No hitNo description
PfamPF000722.7E-13266IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.601.8E-29140201IPR009057Homeodomain-like
PROSITE profilePS5129411.275140199IPR017930Myb domain
SuperFamilySSF466891.29E-19141200IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24143196IPR006447Myb domain, plants
PfamPF002493.4E-6145195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSVNGET RSVLKGITHG ACDYLLKPVR  60
IEELRNVWQH VVRRKFSNRE PNNLDFCKEI SKPPSADSYH RLGQATCDRS SDQNGRPSKK  120
RKELHSEEED EGEENDDAAA SRKPRVVWSI ELHRKFVAAV NQLGIDKAVP KRILELMNVG  180
KLTRENVASH LQKYRLYLRR LSAVASQQAS IAAAFGGRDP FLHMGAFEGL HSYHQPFAPS  240
AALPSFNPHG LLIGAGATAF ELQNFAASKA IQCASSNGAI GHCAGDTNKL NIVSLQGNQQ  300
TDLMQGLTAS SLGPPQLQQK WIHQEPNDLC SIFSGGALAN TMFGTLQRVT GSSLPLEDLL  360
ECTPHIKVGA HPSIGIQAVS PGLLERSVGV SADLRDSSMS QQGDLSISDG FSVDKLPLHI  420
PFDDADTGFM AREQVMDQEG IFSERMTVSV CPSESLIAAN NIKCGASSSG STMLLPPHET  480
ERHSKYLQFG SGSNSRHRMG GLRQDQCLDN GGFSYDGGAI VPEQTNMDDL GTPKLQGGLN  540
SSSCNFDDLL NSIIKVENPH VMTILPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-24140202264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11341.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotB8B3I40.0ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A287VW990.0A0A287VW99_HORVV; Two-component response regulator
STRINGMLOC_11341.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-72response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]