PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11316.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 367aa    MW: 41312.2 Da    PI: 9.733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11316.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07132174346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       W+ eE ++l ++++++  + +  Ia ++++ R+ +++ksr+++
     MLOC_11316.1 132 TWSREETDQLFELCQRFDLR-FIVIADRFPTSRSVEDLKSRYYS 174
                      7*******************.*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162822.2E-31105179IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007175.8E-7129178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5131177IPR009057Homeodomain-like
SuperFamilySSF466894.49E-6132176IPR009057Homeodomain-like
CDDcd116586.54E-19133175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDAKDILGLQ KTSFPSAQEK KPRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL  60
KRRPAVEKEK VAWRWLPFTS SARTDNLQLY HWVRVVNNVP PTGDYDFAKY NTKVDVLKYT  120
DEEYEKYLTE PTWSREETDQ LFELCQRFDL RFIVIADRFP TSRSVEDLKS RYYSVTRALL  180
IARARSFDEV AGNPLVKETF NAAHETERKR ALSALFSQTK QQERKDAEVL AEAKRIMESR  240
AANKNVEEAI APTSFPNAAV PADGVSPLSN NLPSSAATHP AAAANTSIPD TLRMLKVYLR  300
THALDQMVQA VTASAGIRMI KRVDQTLQDL GVNLKPKVPT KAVCAEHLEL RNEILTLLNI  360
QKQVPTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A2e-19104184488DNA methyltransferase 1-associated protein 1
4iej_A2e-19104184488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738720.0AK373872.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3046A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180104.10.0SWR1-complex protein 4
SwissprotQ8VZL61e-161SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A287GF210.0A0A287GF21_HORVV; Uncharacterized protein
STRINGMLOC_11316.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-150MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]