PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 367aa MW: 41312.2 Da PI: 9.733 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 132 | 174 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++ MLOC_11316.1 132 TWSREETDQLFELCQRFDLR-FIVIADRFPTSRSVEDLKSRYYS 174 7*******************.*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 2.2E-31 | 105 | 179 | IPR032563 | DAMP1, SANT/Myb-like domain |
SMART | SM00717 | 5.8E-7 | 129 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-5 | 131 | 177 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.49E-6 | 132 | 176 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 6.54E-19 | 133 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MDAKDILGLQ KTSFPSAQEK KPRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL 60 KRRPAVEKEK VAWRWLPFTS SARTDNLQLY HWVRVVNNVP PTGDYDFAKY NTKVDVLKYT 120 DEEYEKYLTE PTWSREETDQ LFELCQRFDL RFIVIADRFP TSRSVEDLKS RYYSVTRALL 180 IARARSFDEV AGNPLVKETF NAAHETERKR ALSALFSQTK QQERKDAEVL AEAKRIMESR 240 AANKNVEEAI APTSFPNAAV PADGVSPLSN NLPSSAATHP AAAANTSIPD TLRMLKVYLR 300 THALDQMVQA VTASAGIRMI KRVDQTLQDL GVNLKPKVPT KAVCAEHLEL RNEILTLLNI 360 QKQVPTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 2e-19 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 2e-19 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11316.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373872 | 0.0 | AK373872.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3046A24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180104.1 | 0.0 | SWR1-complex protein 4 | ||||
Swissprot | Q8VZL6 | 1e-161 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A287GF21 | 0.0 | A0A287GF21_HORVV; Uncharacterized protein | ||||
STRING | MLOC_11316.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 1e-150 | MYB_related family protein |
Publications ? help Back to Top | |||
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