PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11199.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | SBP | ||||||||
Protein Properties | Length: 384aa MW: 41956.1 Da PI: 10.1628 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.8 | 5.5e-42 | 186 | 262 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls++keyhr+h+vCe hskap+v+v+gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ MLOC_11199.8 186 CQVEGCKVDLSSVKEYHRKHRVCELHSKAPKVVVAGLERRFCQQCSRFHALSEFDQKKRSCRRRLNDHNSRRRKPQP 262 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-33 | 178 | 247 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.667 | 183 | 260 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.32E-40 | 185 | 265 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-32 | 186 | 259 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGSFGMEWNQ RSSVLWDWEN FPPIGGDNPK NAMQAEPRFA AVAAAMGNEP LNSSGGSGTF 60 SSSSEMGYGS SKSSISASID SSSKAGSNME FRFAPVKNPD RNTSENTELG KVDNTRTGTS 120 PSSVVAVSSG EPVIGLKLGK RTYFEDVCGG QSVKSSPSGA ASVPNKSPAL SKKAKAEQQK 180 AHNSYCQVEG CKVDLSSVKE YHRKHRVCEL HSKAPKVVVA GLERRFCQQC SRFHALSEFD 240 QKKRSCRRRL NDHNSRRRKP QPEAISFSSS RMSTMFYDAR QQPNFLFGQA PYVQMRSCGS 300 SSWDEPGGFK VTHTKAPWLK PTTAAGVDGM HLSSQQMSDN VMPHGAHHGF DGFMAFKGTS 360 TKFPNQGISP LMNEFLIRRR TVAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 186 | 259 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 258 | KKRSCRRRLNDHNSRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11199.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355045 | 0.0 | AK355045.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015D14. | |||
GenBank | AK366434 | 0.0 | AK366434.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043A20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187264.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_020187265.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_020187266.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | A2X0Q6 | 1e-153 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-153 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | M0UI97 | 0.0 | M0UI97_HORVV; Uncharacterized protein | ||||
STRING | MLOC_11199.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 6e-44 | squamosa promoter binding protein-like 2 |