PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11130.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Nin-like | ||||||||
Protein Properties | Length: 212aa MW: 24765.1 Da PI: 9.6021 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83 | 2.9e-26 | 71 | 120 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl MLOC_11130.3 71 ASITLVDIAPYFHLPIREASRALKIGVSILKKKCRQYGIPRWPHRKIKSL 120 78**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 20.043 | 55 | 140 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-21 | 72 | 120 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVFQFQRFQQ APQLVQRDSD EKPTRLDAED NKTSDEVEEE SGSDSDEDPQ SGEELSAQVE 60 RRRRAKKQHI ASITLVDIAP YFHLPIREAS RALKIGVSIL KKKCRQYGIP RWPHRKIKSL 120 DSLISDLEFV MDDTDGDAVQ KETCKQREKE KKKEEKDKQN AIQALAKRKR LLESEKETIQ 180 QKPALDLMAE TKLFREDVFK RRYRAKRLPG QL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 169 | KKKEEKDKQNAIQALAKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11130.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372387 | 0.0 | AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158590.1 | 1e-117 | protein RKD5-like | ||||
TrEMBL | A0A287J116 | 1e-150 | A0A287J116_HORVV; Uncharacterized protein | ||||
STRING | MLOC_11130.2 | 1e-148 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 8e-33 | RWP-RK domain-containing protein |