PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_11130.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 459aa MW: 52102.6 Da PI: 11.5273

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_11130.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.3	9.5e-26	318	367	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl MLOC_11130.2 318 ASITLVDIAPYFHLPIREASRALKIGVSILKKKCRQYGIPRWPHRKIKSL 367 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	20.043	302	387	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-20	319	367	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MERRGDQREK EVPAALRWHR EFYWKRRCTA RSTHDNRGNA GTHAAAAAPE TEGVYALCLA 60 ASGGVRALRS SKKSIEPRRP SPTTIVRLNR GITRRQASPP SSLSPPASFI PPRRPDSFHG 120 RRRHHPLRAR RLRQHAPPRG REERARVQGR RGGRGAPVGP VGGEGVRLLP LLLPRGPAPR 180 RRAADTPRRV ARPAGVPRGP GAGRLALRPR LRFPRRRRAA AHASPDALPL PRNPGLVCVP 240 SLYSDLYMVF QFQRFQQAPQ LVQRDSDEKP TRLDAEDNKT SDEVEEESGS DSDEDPQSGE 300 ELSAQVERRR RAKKQHIASI TLVDIAPYFH LPIREASRAL KIGVSILKKK CRQYGIPRWP 360 HRKIKSLDSL ISDLEFVMDD TDGDAVQKET CKQREKEKKK EEKDKQNAIQ ALAKRKRLLE 420 SEKETIQQKP ALDLMAETKL FREDVFKRRY RAKRLPGQL

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MERRGDQREK EVPAALRWHR EFYWKRRCTA RSTHDNRGNA GTHAAAAAPE TEGVYALCLA  60
ASGGVRALRS SKKSIEPRRP SPTTIVRLNR GITRRQASPP SSLSPPASFI PPRRPDSFHG  120
RRRHHPLRAR RLRQHAPPRG REERARVQGR RGGRGAPVGP VGGEGVRLLP LLLPRGPAPR  180
RRAADTPRRV ARPAGVPRGP GAGRLALRPR LRFPRRRRAA AHASPDALPL PRNPGLVCVP  240
SLYSDLYMVF QFQRFQQAPQ LVQRDSDEKP TRLDAEDNKT SDEVEEESGS DSDEDPQSGE  300
ELSAQVERRR RAKKQHIASI TLVDIAPYFH LPIREASRAL KIGVSILKKK CRQYGIPRWP  360
HRKIKSLDSL ISDLEFVMDD TDGDAVQKET CKQREKEKKK EEKDKQNAIQ ALAKRKRLLE  420
SEKETIQQKP ALDLMAETKL FREDVFKRRY RAKRLPGQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	416	KKKEEKDKQNAIQALAKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_11130.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372387	0.0	AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A287J113	1e-160	A0A287J113_HORVV; Uncharacterized protein
STRING	MLOC_11130.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-30	RWP-RK domain-containing protein