PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11014.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 271aa    MW: 30271.7 Da    PI: 7.9743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11014.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.29.2e-3037140198
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefe 91 
                   f+k+ltpsdv+k++rlv+pk++ae++    g++ e++  l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++   ++ +
  MLOC_11014.7  37 FEKALTPSDVGKLNRLVIPKQHAERCfplgGESGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERVRGlgTGDR 133
                   99***************************9556668889************************************************8865545555 PP

                   .EEEEE- CS
            B3  92 lvvkvfr 98 
                   l+++ +r
  MLOC_11014.7 134 LFIGCRR 140
                   6666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-4032149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2834128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-2635127No hitNo description
PfamPF023624.9E-2737141IPR003340B3 DNA binding domain
SMARTSM010193.6E-2137141IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6937141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE  60
RCFPLGGESG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV  120
HFERVRGLGT GDRLFIGCRR RGDVSAPTAV PPPPAVRVVP ASGHNPREQQ PWSPMCYSTS  180
GSYPTSPATS HAYRRSAEHD HSDMHHAGEP QWDADARSCS PASAPTRRLR LFGVNLDCGP  240
EPEAEAAPAT YGYVHQNPYA AMSPVPSNRG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50321413113B3 domain-containing transcription factor NGA1
5os9_B1e-50321413113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11014.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752770.0AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174894.11e-180B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-127Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLM0UHK60.0M0UHK6_HORVV; Uncharacterized protein
STRINGMLOC_11014.70.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]