PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11014.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 213aa MW: 24070 Da PI: 9.2473 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95 | 5.2e-30 | 37 | 140 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sef 90 f+k+ltpsdv+k++rlv+pk++ae++ g++ e++ l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ ++ MLOC_11014.10 37 FEKALTPSDVGKLNRLVIPKQHAERCfplgGESGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERVRGlgTGD 132 99***************************9556668889************************************************886554555 PP ..EEEEE- CS B3 91 elvvkvfr 98 +l+++ +r MLOC_11014.10 133 RLFIGCRR 140 56666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-40 | 32 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-28 | 34 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.81E-27 | 35 | 127 | No hit | No description |
SMART | SM01019 | 3.6E-21 | 37 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-27 | 37 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.69 | 37 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE 60 RCFPLGGESG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV 120 HFERVRGLGT GDRLFIGCRR RGDVSAPTAV PPPPAVRVVP ASGHNPREQQ PWSPMCYSTS 180 GSYPTSPATS HAYRRSAEHD HSDMHHAGKI KAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-51 | 32 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-51 | 32 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11014.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375277 | 0.0 | AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174894.1 | 1e-147 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 1e-101 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | M0UHK8 | 1e-159 | M0UHK8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_11014.7 | 1e-155 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 3e-48 | B3 family protein |
Publications ? help Back to Top | |||
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