PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10987.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 512aa    MW: 55711.5 Da    PI: 5.8881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10987.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06270291223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C +Cgk F+r  nL+ H+r H
  MLOC_10987.1 270 FCVICGKGFKRDANLRMHMRGH 291
                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.78E-5267294No hitNo description
SMARTSM003550.015269291IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614269296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-5270295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
SMARTSM0035568318351IPR015880Zinc finger, C2H2-like
SMARTSM0035522356378IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKASSSMAGD ASGNTDPGQQ GVRFSSMDQS CFARPGQSIP GYPPFFGPQS SNFYLPDDSV  60
GKACDPFEPN PPVNEPIADW DPQAMLSNLT FLEQKIKQVK DIVQSMGNRG SQVGGASCEL  120
AAKQQLVTAD LTSIIIQLIS TAGSMLPSMK TPLLSSNPAV RQINTPGSTM GFGSTANQRP  180
SATREEMIPD ISKTSDYEEL MNTLNTAHDE KDDQIKCPNP CGVEGSEPVP MEDHDVKESD  240
DGGEAEHLPP GSYVVLQLEK EEILAPHTHF CVICGKGFKR DANLRMHMRG HGDEYKTPAA  300
LAKPMRDSGS DPTPVTRYSC PYVGCKRNKE HRKFQPLKTI LCVKNHYKRS HCDKRYTCSR  360
CNTKKFSVIA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG HVALFQGHTP ALPMDDIKAT  420
GASEQPQGSE AMDDMVGSTG YNFPGSTSDG VPNLDMKVAD DTRGYFSPLN FDPCFGALDD  480
FARPGFDISE NPFSFLPSGP GSCSFGQLSG DN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2524060.0AK252406.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf151p02, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166559.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLS5RIM40.0S5RIM4_WHEAT; STOP1
STRINGMLOC_10987.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-157C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]