PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10878.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 20973.3 Da PI: 10.5616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 69 | 8.3e-22 | 35 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a++aa+++++g MLOC_10878.2 35 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAALRFKG 85 68********.**********64....55************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.11E-20 | 35 | 95 | No hit | No description |
Pfam | PF00847 | 1.0E-14 | 35 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-23 | 36 | 94 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.567 | 36 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-33 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-34 | 36 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-12 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-12 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MYLMGETVTR QHSAPLSAAA TSSSSTASEQ QQQRPRYRGV RQRPWGKWAA EIRDPVKAAR 60 VWLGTFDTAE DAARAYDAAA LRFKGAKAKL NFPAAGHAIG QLLAAGGGTS PSLRQQQRPV 120 VAFRPQINAP AAVAGEEFPD LHRYAHILQS GDVDLRTVAA GGITPVQSSS STPAHDSGSP 180 PRPDDRRHGE RNSGPGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-24 | 37 | 93 | 6 | 63 | ATERF1 |
3gcc_A | 6e-24 | 37 | 93 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10878.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093996 | 1e-69 | FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188611.1 | 1e-100 | ethylene-responsive transcription factor RAP2-6-like | ||||
TrEMBL | M0UH30 | 1e-140 | M0UH30_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10878.1 | 1e-136 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-23 | ERF family protein |