PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10784.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LBD | ||||||||
Protein Properties | Length: 284aa MW: 30409.7 Da PI: 7.3782 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.2 | 3.2e-39 | 51 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a+la+ MLOC_10784.1 51 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPISDRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQVMTLQAQLAS 147 7*************************89********************************************************************9 PP DUF260 97 lkee 100 lk++ MLOC_10784.1 148 LKAH 151 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.328 | 50 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 51 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MALGRPLHPN HPQQQQQRSP QHRRQQRSGR PPSDPAVITD RLMSMTGLGS PCGACKFLRR 60 KCARGCVFAP YFCHEQGAAH FAAIHKVFGA SNVSKLLAHL PISDRAEAAV TVSYEAQARL 120 RDPVYGCVAH IFALQQQVMT LQAQLASLKA HAPPAPQGMQ QHQDDVKGYV GGGAADQYGH 180 GAYQWYNGNG AAAQQQCAYG GNGGAVAGHD SITALLSGSA ASDYMMYHAL EQSASDDDRH 240 AAAAAFEAAD QSSFGTEESG WRSSSGYQDC EDLQSVAYAY LNRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 44 | 145 | 4 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 44 | 145 | 4 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10784.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU158414 | 0.0 | KU158414.1 Triticum aestivum MOR-D gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197851.1 | 1e-153 | LOB domain-containing protein 29-like | ||||
Swissprot | Q5UG13 | 1e-102 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | M0UGQ3 | 0.0 | M0UGQ3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10784.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-61 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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