PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 20616 Da PI: 7.8935 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.0005 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F ++ L H++ H MLOC_10704.1 47 FGCQYCSREFANSQALGGHQNAH 69 56******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.86E-6 | 44 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 45 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.489 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0022626 | Cellular Component | cytosolic ribosome | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MADIRCDQPK MTPSPSSLRI FGYDVPGGAT DAVLTPPPTP RADARRFGCQ YCSREFANSQ 60 ALGGHQNAHK KERQQHKRAR LHVDARMSYF APPPGHLIAV GHAGSAAYTR ERDAFHRWVY 120 LAHQSTAGLP FHALPAGGGC HAEPRLLQDP RDCGSAAVST GSGARACSPA DDSTEEASAM 180 GLDLDLSLAP ATSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183213.1 | 1e-119 | zinc finger protein 6-like | ||||
TrEMBL | A0A3B6H255 | 1e-117 | A0A3B6H255_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453FZ79 | 1e-117 | A0A453FZ79_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453FZC3 | 1e-117 | A0A453FZC3_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_10704.1 | 1e-140 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12356 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 2e-15 | C2H2 family protein |