PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GeBP | ||||||||
Protein Properties | Length: 348aa MW: 38205.8 Da PI: 5.3342 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.9 | 7.2e-34 | 67 | 166 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+q +fe+++ MLOC_10638.1 67 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHEQAVFEIARN 163 79*************************9977778***************************************8889******************** PP DUF573 95 iWg 97 iW+ MLOC_10638.1 164 IWR 166 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-30 | 68 | 165 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MLPMVDDHSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSSAS VVAPASASAT 60 VGERRPLFQR LWTEEDEIVI LRAFAEFTAQ RGTAFASHQY DTEPFYEEMR RRLQLDFSKS 120 QLAEKLRRLK RKYRNCVERL RCSGNTFSFR SPHEQAVFEI ARNIWRPSSD KHGRDPSAAD 180 SEDDATITAT NAAANGDAKS PSSSRAHRRG RRRRTADLAA DASEAPPPYK PGSMPVKTED 240 SLPAFFPQVS MDGAEPVVAP VVNTESSFLT PLFKEMVRAM LGIGGCPSPL GLGAKVPEQP 300 SAVLGIPMEG EKWRQQRILE LEVYLRRIDL LQDEVKSALE ELKSAPPT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10638.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250922 | 0.0 | AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169680.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020169681.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | M0UG34 | 0.0 | M0UG34_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10638.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 8e-34 | DNA-binding storekeeper protein-related transcriptional regulator |