PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10595.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 299aa    MW: 32609.2 Da    PI: 8.4606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10595.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.4e-15106157155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +rr+h ++Er+RR+++N+ ++ Lr ++P++   ++++ + a+i+  A++Y+k+L+
  MLOC_10595.2 106 QRRTHIAVERNRRRQMNEYLAALRLIMPQS---YAQRGDQASIVGGAINYVKELE 157
                   79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.31E-14104161No hitNo description
Gene3DG3DSA:4.10.280.103.6E-14104161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17105174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-12106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALEAVVLAQ GHFGYGLQAP GLAPWCDMLG AGGFLEDDWD QQLLAAPVAP NAEDQWEPVS  60
SWDQSEASSE GKAAAPPEPA TAAAATGRRK RRRAKIVKNK EEVESQRRTH IAVERNRRRQ  120
MNEYLAALRL IMPQSYAQRG DQASIVGGAI NYVKELEQLL QSLEVQKSVK NRTGRSPFAS  180
SFTFPQYSAS CNITQATTAS DAGSGADSSG IKSEAGVADI EVTMVEGHAS LKVLARRRPK  240
QLLRLVAGLQ QLRIPALHLN VTTVDAMVLY SFSLKVIITF SESAMLLCLY SMFILHTHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10595.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153287.11e-166transcription factor bHLH96-like
SwissprotQ9C7T42e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A287PRS40.0A0A287PRS4_HORVV; Uncharacterized protein
STRINGMLOC_10595.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]