PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10556.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 676aa    MW: 74399.4 Da    PI: 4.7211
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10556.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.6e-163173145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++WT+eE+  l++a++++G++ W+   + ++ gRt++++k++w+
     MLOC_10556.3 31 KDAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 73
                     679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-201981IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-52038IPR009057Homeodomain-like
PROSITE profilePS5129424.2262680IPR017930Myb domain
SMARTSM007171.9E-143078IPR001005SANT/Myb domain
PfamPF002493.5E-143174IPR001005SANT/Myb domain
CDDcd001672.39E-113373No hitNo description
Gene3DG3DSA:1.10.10.601.7E-173975IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MVNYCPSFAR TYRKAMSGTR WHNHLNPGIN KDAWTQEEEI TLIHAHRMYG NKWAELTKFL  60
PGRTDNSIKN HWNSSVKKKI DSYMSSGLLA QVSRLPLVEH HAHFSSSPAI TQQNSEDSES  120
NAVREVEDSS GCSQSSLGIV SCSQVQDTNL TLSCDLHVNA DPSKTEAHDS QSSMCQEGYT  180
STEGVASVMS EVHCHVPSSR FDPDTLLQQE ISQRMNSQMD VDEIPGNSMF ENNQTICSTS  240
NNERPMLQYE IASDMPISVL TNVSGAEQKL HFMSEADFSS PNCLKSELWQ DISFQSLLSG  300
PDVVDADSLS RPNHQSETHS SEANINFLAA PNPSHTSDPS SMMVVAYGQD PSMSVPQSLI  360
SNGLSDAADE ESREMQASGS EMITCIHDSF GDSEQFATPG STDGRHGSSA TIERIPEYGD  420
KQLTDAEEPA ACMAKEPSMA QGEAVPDEKQ DKGALFYEPP RFPSMDVPFV SCDLVTSGDL  480
QEYSPLGIRQ LMRSTMSVTT PLRLWGSPTH DESPDVVLKS AAKSFISTPS ILKKRPRDLL  540
SPTSEKGIEK KSRTEQDSSV LGTSSVSAQT SCMHAIKDKA IVTESVFCTN RSSSFKPLEK  600
KLEFCDENKD NLGESEQAKD GRNAQNNYSV DEHARGEQCS TANMVNINDE SHLQLFLLST  660
RGMTFLIMAQ MPCIRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25208248110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10556.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9968270.0HE996827.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_69800.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153262.10.0transcription factor MYB3R-1-like isoform X1
TrEMBLA0A287KMV90.0A0A287KMV9_HORVV; Uncharacterized protein
STRINGMLOC_10556.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.14e-81Homeodomain-like protein