PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10538.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 337aa MW: 38097.2 Da PI: 5.5392 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.4e-11 | 183 | 228 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E++ ++++ + +G g+Wk I++++ +++t q+ s+ qky MLOC_10538.2 183 RFWTIDEHKMFLRGLRVYGRGDWKNISKHFVTTKTHIQVSSHAQKY 228 56*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.95 | 9 | 65 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 13.374 | 177 | 233 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-16 | 178 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-9 | 179 | 236 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-7 | 181 | 231 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.1E-14 | 181 | 231 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.28E-6 | 185 | 229 | No hit | No description |
Pfam | PF00249 | 1.3E-7 | 185 | 228 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MDPFVNQGWT SSEEEEARSL IAEHNSHGIM NDENNNRHNN IVDAIHELFP SKTRQQVTNL 60 YINLEVESYM MNSREESYVG GNTQSVCPNN LVNNNFGMSG EGSGTSNICG INTMGDHVIG 120 GYGVREEEAA TIDRDGLIFG RSLEDARIAQ TNESMLIMDK NKMQVLENNV PSDQTVVPPR 180 QRRFWTIDEH KMFLRGLRVY GRGDWKNISK HFVTTKTHIQ VSSHAQKYFK RINKRASFGT 240 QRYSINDVGL DDDDLWAVNN SSSPSQMMGF NGLNNETSFG MHDPTSSSIV MNNQPHLWPP 300 VTYSQQENQQ PMWSEHQMLG STTVVMGDMR NSAPPSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10538.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169909.1 | 1e-82 | uncharacterized protein LOC109755402 | ||||
TrEMBL | M0UFQ9 | 0.0 | M0UFQ9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10538.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-17 | MYB family protein |