PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10528.1 | ||||||||
Common Name | mybS3, mybst1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28085.3 Da PI: 5.3562 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 7.9e-14 | 33 | 77 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky MLOC_10528.1 33 PWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 77 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.274 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-17 | 28 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-19 | 29 | 81 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 30 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-11 | 33 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.04E-9 | 33 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
GDVGHDAAAE GYASDDFVQG SSSANRERKK GVPWTEEEHR RFLLGLQKLG KGDWRGISRN 60 FVVSRTPTQV ASHAQKYFIR QANMSRRKRR SSLFDLVPDE SDLPPLPGNH EPEAQILNHP 120 PLPPPMEEEE VESMESDTSV IAESSSASAI MPENLQPSYP VLVPAYFSPF LQFSVPFWQN 180 QNDGDDLGQG THEIVKPVPV HSKSPINVDE LVGMSKLSIG DPKQDTVSTS LSLKMVGGQN 240 RQSAFQANLP TRAQA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10528.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366515 | 0.0 | AK366515.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169621.1 | 0.0 | uncharacterized protein LOC109755147 | ||||
Swissprot | Q7XC57 | 1e-148 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | F2DRJ7 | 0.0 | F2DRJ7_HORVV; Predicted protein | ||||
TrEMBL | Q14SM5 | 0.0 | Q14SM5_HORVU; Mybst1 protein | ||||
STRING | MLOC_10528.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-53 | MYB_related family protein |
Publications ? help Back to Top | |||
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