PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10418.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 595aa    MW: 66055.7 Da    PI: 7.0865
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10418.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.62.8e-23196249155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr++Wt  LH++F+ea++++ G ++A Pk+i elm+v+ Lt+e ++SHLQkYRl
  MLOC_10418.2 196 KPRVEWTIALHNKFLEAINEI-GLNRAAPKKIWELMNVDYLTRESIASHLQKYRL 249
                   79*******************.********************************8 PP
2Response_reg77.25.7e-26251331109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+ +l++ +y + ++a d++ al++l++ +  +Dl+++D++mpgmdG++ll+ ir e  +lp+i++++  e++ + + ++ Ga 
  MLOC_10418.2  25 VLVVDDDCVCLKVLEALLRHCKY-QPTTAMDAKTALRMLRAGKqqFDLVITDVRMPGMDGFKLLELIRLEM-DLPVIMLSMDYEKKAVMKGIEHGAC 119
                   89*********************.999************766666**********************9976.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   df +Kp+   +l +
  MLOC_10418.2 120 DFMVKPVRTHKLKN 133
                   *******9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1215593IPR017053Response regulator B-type, plant
SuperFamilySSF521724.55E-3421146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-3922155No hitNo description
SMARTSM004489.9E-3123135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.7124139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.07E-2626138No hitNo description
SuperFamilySSF466898.78E-17193253IPR009057Homeodomain-like
PROSITE profilePS512949.474193252IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-25193254IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-22196249IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MAAMGGVSPT MEDVVEDKFP EGLRVLVVDD DCVCLKVLEA LLRHCKYQPT TAMDAKTALR  60
MLRAGKQQFD LVITDVRMPG MDGFKLLELI RLEMDLPVIM LSMDYEKKAV MKGIEHGACD  120
FMVKPVRTHK LKNIWQHVKR WRNPEATSHI SDDDNDDQRV QQWTAAKSEG SRNRINGGDD  180
SSKNKESTYI STTQKKPRVE WTIALHNKFL EAINEIGLNR AAPKKIWELM NVDYLTRESI  240
ASHLQKYRLY LKRVKSNSSG DTYGRRNSWH NMKNQSNFMH NPEHERWSVA SGDIASWSTD  300
NYGAMGHFAQ TKNIQGNFSM GSFLHGGRMS SYIGPQPPDV SRFASSGDPS IRLYNNIPNE  360
IILDEFPSCN SYANLMRGKL METCKGKTPS TLQSSFPKTT GGGGRSLVPS QVDIPRINQL  420
ESFGMSSGQL HLQNEMAPFI INTTSMGAFS DKMVAFNVAS NPSSTGMLNA HSSAPVAPYQ  480
MVNDGSITKL ATCYIEQMAP FDMESNTSSA GMMLNGSSAP CASRTSTKET HMVNGGRTTS  540
TRPSHQTNSF VSLTQLLDGG DGAGILPMQE GTLDQEQFND QLNEINAFSM DDIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22192254163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10418.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198970.10.0two-component response regulator ORR24-like
TrEMBLM0UFB70.0M0UFB7_HORVV; Two-component response regulator
STRINGMLOC_10418.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-71response regulator 12