PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10322.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 26446.8 Da PI: 8.3833 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5e-12 | 2 | 35 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ a++ +G++ W++Ia+ + gRt++ +k++w++ MLOC_10322.2 2 IISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 35 689********.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0029 | 1 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-14 | 1 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.976 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 6.31E-8 | 1 | 36 | No hit | No description |
SuperFamily | SSF46689 | 2.73E-9 | 2 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-10 | 2 | 35 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MIISAHAIHG NKWASIAKLL VGRTDNAIKN HWNSTLRRRY CTGTRCTRSA SAEQPIREMS 60 RAASEERWPL SGPSSFSVME VKEAPVQTVS ESSARALQIR DINNFSSEAV ERSYPVRPVA 120 TVGAFRPYSL GSAQPMQMEM SSSTKFPTLQ PFTPEIAVSK FADTTCFATD VPNKCGHGCC 180 STEERPRNNS LLGPEFKEFI DHPPILSSSF ASLVSEISSI AWMNSGMQSS NSGNLVQSNP 240 PA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10322.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564427 | 0.0 | FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165805.1 | 1e-163 | transcription factor MYB25-like | ||||
TrEMBL | A0A287M1S4 | 1e-177 | A0A287M1S4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287M1T8 | 1e-177 | A0A287M1T8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10322.3 | 1e-177 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-29 | myb domain protein 109 |