PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10322.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 458aa MW: 49041.4 Da PI: 6.2386 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 155 | 200 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v + G ++W+tIar ++ gR++k+c++rw + MLOC_10322.1 155 KGPWSPEEDAMLTNLVMRDGARNWTTIARGIP-GRSGKSCRLRWCNQ 200 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.6e-17 | 207 | 251 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd+ ++ a++ +G++ W++Ia+ + gRt++ +k++w++ MLOC_10322.1 207 RKPFTEEEDQMIISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 251 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.182 | 150 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 153 | 248 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 154 | 203 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-15 | 155 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 156 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.97E-12 | 157 | 199 | No hit | No description |
PROSITE profile | PS51294 | 26.258 | 202 | 256 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 206 | 254 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 207 | 251 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 209 | 255 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-12 | 209 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSSGTAVSPQ PRSSSPPTAA VSAHSRTAPA ADEPEAPDPA QPPPHHASQS PPPSVSDEAE 60 APAHPQPLPR HPLPSSSSSS PSTAADETQG PVQPPPQTQM HRPSSPSPST AEPQTPVLPQ 120 PNHSSPPLSG DDDDDDVVIT GAVGGASTAA DERVKGPWSP EEDAMLTNLV MRDGARNWTT 180 IARGIPGRSG KSCRLRWCNQ LDPQVKRKPF TEEEDQMIIS AHAIHGNKWA SIAKLLVGRT 240 DNAIKNHWNS TLRRRYCTGT RCTRSASAEQ PIREMSRAAS EERWPLSGPS SFSVMEVKEA 300 PVQTVSESSA RALQIRDINN FSSEAVERSY PVRPVATVGA FRPYSLGSAQ PMQMEMSSST 360 KFPTLQPFTP EIAVSKFADT TCFATDVPNK CGHGCCSTEE RPRNNSLLGP EFKEFIDHPP 420 ILSSSFASLV SEISSIAWMN SGMQSSNSGN LVQSNPPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-38 | 154 | 255 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10322.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564427 | 0.0 | FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165805.1 | 0.0 | transcription factor MYB25-like | ||||
TrEMBL | A0A3B6H1E9 | 0.0 | A0A3B6H1E9_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_10322.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-68 | myb domain protein 109 |