PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10280.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 194aa    MW: 21864.6 Da    PI: 10.1383
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10280.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.1e-1693137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++++ kqlG+g+W+ I++ + ++Rt+ q+ s+ qky
     MLOC_10280.3  93 PWTEEEHRKFLEGLKQLGKGDWRGISKNFVTTRTATQVASHAQKY 137
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.74486142IPR017930Myb domain
SuperFamilySSF466891.0E-1887142IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-1989141IPR006447Myb domain, plants
SMARTSM007172.7E-1190140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-1291136IPR009057Homeodomain-like
CDDcd001676.97E-1193138No hitNo description
PfamPF002494.6E-1393137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEEEGGARKA VLFRLFGVEV RGAEEEEEDD AEPMELKKST SMPNLASIGP ILPRGEASAS  60
HDKGYASDDG ELASTPQLKR RRRKAQERKK GIPWTEEEHR KFLEGLKQLG KGDWRGISKN  120
FVTTRTATQV ASHAQKYFLR QTNPGKKKRR ASLFDVGIPA GHGYDDQVLD PVQSSSRQVN  180
QNIHRIQHLT YALR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883KRRRRK
27889KRRRRKAQERKK
37989RRRRKAQERKK
4145149KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10280.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516100.0AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181078.11e-103transcription factor DIVARICATA-like
SwissprotB8BI934e-60MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC514e-60MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLM0UES91e-141M0UES9_HORVV; Uncharacterized protein
STRINGMLOC_10280.21e-120(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.19e-33MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]