PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 22870.8 Da PI: 9.4191 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 1e-15 | 93 | 137 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++++ kqlG+g+W+ I++ + ++Rt+ q+ s+ qky MLOC_10280.1 93 PWTEEEHRKFLEGLKQLGKGDWRGISKNFVTTRTATQVASHAQKY 137 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.744 | 86 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-18 | 87 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-19 | 89 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-11 | 90 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-12 | 91 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.78E-11 | 93 | 138 | No hit | No description |
Pfam | PF00249 | 5.1E-13 | 93 | 137 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEEEGGARKA VLFRLFGVEV RGAEEEEEDD AEPMELKKST SMPNLASIGP ILPRGEASAS 60 HDKGYASDDG ELASTPQLKR RRRKAQERKK GIPWTEEEHR KFLEGLKQLG KGDWRGISKN 120 FVTTRTATQV ASHAQKYFLR QTNPGKKKRR ASLFDVGIPA GHGYDDQLPS PHSVGTKLAP 180 AEKILHTDHG DVPVNSTQLV FHFVSC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 83 | KRRRRK |
2 | 78 | 89 | KRRRRKAQERKK |
3 | 79 | 89 | RRRRKAQERKK |
4 | 145 | 149 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362457 | 0.0 | AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10. | |||
GenBank | AK373165 | 0.0 | AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181078.1 | 1e-121 | transcription factor DIVARICATA-like | ||||
Swissprot | B8BI93 | 3e-72 | MYBS2_ORYSI; Transcription factor MYBS2 | ||||
Swissprot | Q7XC51 | 3e-72 | MYBS2_ORYSJ; Transcription factor MYBS2 | ||||
TrEMBL | A0A287FQ11 | 1e-140 | A0A287FQ11_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287FQ24 | 1e-140 | A0A287FQ24_HORVV; Uncharacterized protein | ||||
TrEMBL | M0UES8 | 1e-140 | M0UES8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10280.2 | 1e-140 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 1e-32 | MYB_related family protein |
Publications ? help Back to Top | |||
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