PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 33455 Da PI: 9.7263 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.2 | 1.2e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ ++ ++G g W+tI + R+ ++k++w++ MLOC_10278.1 5 KQKWTAEEEAALKAGIGKHGAGKWRTILKDPEfsnilRYRSNVDLKDKWRN 55 79***********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.784 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.34E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.65E-19 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 21.532 | 122 | 193 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.2E-13 | 123 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.6E-6 | 123 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.0E-13 | 127 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.2E-7 | 130 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGI GKHGAGKWRT ILKDPEFSNI LRYRSNVDLK DKWRNMNVTV 60 NASGSRDKVR TTATTTPTAK KPRSAPKQES QSMAVTSITS DGDDDVVDVK PIIKPIVTFT 120 TGNKSLSRLE NIILEAVKTL NEPTGSYKTA VANYIEEQYW PPADFDHVLS AKLNELTSSG 180 KLMKVNRKYR IAPSSSYLEG RSSKMVLLDD IKKEPTKVEK VERDGFTAHT KSQVDAELAR 240 MRNMSAEEAA AAAARAVAEA DAIMAEAEAA VREAEAAEAD AVAAQAFAEA AMLTLKNRSS 300 VKLIIRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249564 | 0.0 | AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159514.1 | 1e-176 | single myb histone 5-like | ||||
Swissprot | C0HIA3 | 1e-105 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | M0UER9 | 0.0 | M0UER9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10278.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-61 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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