PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10214.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 412aa    MW: 44233.1 Da    PI: 9.813
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10214.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.23.4e-39561903129
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssasnsssg...ka 90 
                   g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++     ++ +a  + +++ss  + ++++s+   ++
  MLOC_10214.1  56 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELeaaafPNHPA--SaNKQSSALQPEAHGSQpqqQQ 150
                   78*************************************************************8876633333..1222223333222222245466 PP

           TCP  91 aksaakskksqksaasalnlak.esrakarararertrek 129
                    + +a+s+ s++s+ s+l+l++ +sr kar+rar+r+++ 
  MLOC_10214.1 151 LTRSACSSTSETSKGSVLSLSRsDSRVKARERARDRSASV 190
                   7777799999999999******9************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3956190IPR005333Transcription factor, TCP
PROSITE profilePS5136932.11257115IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.504173193IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDLSVAAAVE LGKRGRTEDQ DQDQGHGDAK RLALVPWPPH QQHPSSRIYR VSRGSGGKDR  60
HSKVYTAKGI RDRRVRLSVA TAIQFYDLQD RLGYDQPSKA VEWLIKAAAA AIDKLPELEA  120
AAFPNHPASA NKQSSALQPE AHGSQPQQQQ LTRSACSSTS ETSKGSVLSL SRSDSRVKAR  180
ERARDRSASV KDKEAGDDSA TRAPSAQAAS FTELLTGLAA ATPAAAQHKH HNSWHQMTAS  240
ATADYLGFAQ PRKSGHGMLH TFASPAPHLG NIAPVAMAPG QHFSLSAGGE PQTEMPHFSF  300
SQDHYMPVHA AATSAPSVDY NLNFSMSSGL VGVNNTRGTL QSNSQPHLSG HHQQQQLQRL  360
STPLDAPHIP FLFSPAVAVA SPTTAESHFG AAAALQLWEG FRHSDMKEKG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2662116155Putative transcription factor PCF6
5zkt_B2e-2662116155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703480.0AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165443.10.0transcription factor PCF6-like
SwissprotQ10CE88e-77PCF6_ORYSJ; Transcription factor PCF6
TrEMBLF2E2H70.0F2E2H7_HORVV; Predicted protein
STRINGMLOC_10214.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2