PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10030.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 279aa    MW: 31403 Da    PI: 10.557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10030.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-094385347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e + +a +q G++ +++I  +++ g+   q++++++ +
     MLOC_10030.8 43 AWTRQEEESFFNALRQVGKN-FEKITLRVQ-GKNKDQVRHYYYRL 85
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.08E-103889IPR009057Homeodomain-like
PROSITE profilePS5129312.4133990IPR017884SANT domain
SMARTSM007174.3E-64088IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-64388IPR009057Homeodomain-like
CDDcd001673.94E-64386No hitNo description
PfamPF002494.2E-74385IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEKEVCEEMS PPPQPVDLPV DTPPSSSDPS EKPAKKATRQ WAAWTRQEEE SFFNALRQVG  60
KNFEKITLRV QGKNKDQVRH YYYRLVRRMK KLLGPGFSLD ARNSKDTIAA MLRWWSLLEK  120
FSCSASKLHL KPRRFKTFVD ALGNQLLKDR KRVRRKRPQG EPNCNKSGVI KGDLSATRTV  180
RQKRRAGGAG ACAAYKKWER AAMAGVSLVA DAAEELERNM VTQNLSCNAD ATTLASSPNN  240
VSTVDDMGTN HMKEGDLQAP SKLKLQLFPI NEATRKALE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148157DRKRVRRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10030.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2521320.0AK252132.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144c03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154863.11e-170TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT86e-83TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A287PCQ01e-180A0A287PCQ0_HORVV; Uncharacterized protein
TrEMBLA0A287PCT11e-175A0A287PCT1_HORVV; Uncharacterized protein
TrEMBLA0A287PD331e-180A0A287PD33_HORVV; Uncharacterized protein
TrEMBLM0UDK41e-176M0UDK4_HORVV; Uncharacterized protein
STRINGMLOC_10030.41e-175(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.22e-77TSL-kinase interacting protein 1