PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10030.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 415aa MW: 46450 Da PI: 10.411 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 43 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ g+ q++++++ + MLOC_10030.7 43 AWTRQEEESFFNALRQVGKN-FEKITLRVQ-GKNKDQVRHYYYRL 85 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.413 | 39 | 90 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 9.72E-10 | 39 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-6 | 40 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 43 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.18E-6 | 43 | 86 | No hit | No description |
Pfam | PF00249 | 7.4E-7 | 43 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MEKEVCEEMS PPPQPVDLPV DTPPSSSDPS EKPAKKATRQ WAAWTRQEEE SFFNALRQVG 60 KNFEKITLRV QGKNKDQVRH YYYRLVRRMK KLLGPGFSLD ARNSKDTIAA MLRWWSLLEK 120 FSCSASKLHL KPRRFKTFVD ALGNQLLKDR KRVRRKRPQG GTHLSSSSPV LTKTPGNQSF 180 AVQLLPVDAQ NGNKGASSKG VFMKRVAEPN CNKSGVIKGD LSATRTVRQK RRAGGAGACA 240 AYKKWERAAM AGVSLVADAA EELERNMVTQ NLSCNADATT LASSPNNVST VDDMGTNHMK 300 EGDLQAPSKL KLQLFPINEA TRKALEKDDH NPHLELTLSS RKKMSSVLEH LTRKWGNSNI 360 ACGELVLFPY CAHQEDLATY QRWTTRDTVA VADVFLSVNS PSIFRLRYGW FSLAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 157 | DRKRVRRKRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10030.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252132 | 0.0 | AK252132.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144c03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154863.1 | 0.0 | TSL-kinase interacting protein 1 isoform X2 | ||||
Swissprot | Q8LJT8 | 1e-132 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A287PCQ0 | 0.0 | A0A287PCQ0_HORVV; Uncharacterized protein | ||||
TrEMBL | M0UDK4 | 0.0 | M0UDK4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10030.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 1e-128 | TSL-kinase interacting protein 1 |