PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10030.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 753aa MW: 83145 Da PI: 5.3815 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9e-09 | 43 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ g+ q++++++ + MLOC_10030.4 43 AWTRQEEESFFNALRQVGKN-FEKITLRVQ-GKNKDQVRHYYYRL 85 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.413 | 39 | 90 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 2.09E-9 | 39 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-6 | 40 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-6 | 43 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.78E-6 | 43 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 43 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MEKEVCEEMS PPPQPVDLPV DTPPSSSDPS EKPAKKATRQ WAAWTRQEEE SFFNALRQVG 60 KNFEKITLRV QGKNKDQVRH YYYRLVRRMK KLLGPGFSLD ARNSKDTIAA MLRWWSLLEK 120 FSCSASKLHL KPRRFKTFVD ALGNQLLKDR KRVRRKRPQG GTHLSSSSPV LTKTPGNQSF 180 AVQLLPVDAQ NGNKGASSKG VFMKRVAEPN CNKSGVIKGD LSATRTVRQK RRAGGAGACA 240 AYKKWERAAM AGVSLVADAA EELERNMVTQ NLSCNADATT LASSPNNVST VDADMGTNHM 300 KEGDLQAPSK LKLQLFPINE ATRKALEKDD HNPHLELTLS SRKKMSSVLE HLTRKWGNSN 360 IACGELVLFP YCAHQEDLAT YQRWTTRDTV AVADVFLSVN SPSIFRLRYG WFSLAELEAG 420 LSEISLTRFE NCMIPEDVQV RSSEACVQKD GTLPSDFTSE RSSTNSKDQS ALLLGTPSIT 480 GKNAEEEPYS NTSPSQSVDH NQEQVPANQA FEVDPQIDYL AIPELDWADT LTDISVGYLL 540 TEASKAANLD CEVTSIAKNA LFHENPCSCD SFDAAVALHA SRYQAAEQPA HTSHSTIWGA 600 EEACDEFSFM PATARKQEGL NTSASSPPDS DNEVHSSNSE GFHGFLQDLA GGDTPGNPCA 660 DDAKAMEELC ARSLPQSDND FGLRDQPLDD IFWHDSLGPL DLDIPPIRSL ADEFILGDSQ 720 NSWSRMMENS MDAFRNMSFF ASDNNDSVLP PIM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 157 | DRKRVRRKRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10030.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252132 | 0.0 | AK252132.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144c03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154862.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
TrEMBL | M0UDK4 | 0.0 | M0UDK4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10030.4 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 1e-156 | TSL-kinase interacting protein 1 |