PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10017.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35674.1 Da PI: 6.27 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + r++lg+f +aeeAa+a++ +++++g MLOC_10017.3 75 QFRGIRQRP-WGKWAAEIRDPI----KgFRVWLGTFNSAEEAARAYDVEARRIRG 124 69*******.**********72....359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.06E-32 | 75 | 132 | No hit | No description |
SMART | SM00380 | 1.6E-35 | 75 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 75 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 75 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.393 | 75 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 76 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MENDYKEFEF DSGDSDLELG RDGVAEEDNN DEVDEIMSFV AIKRSLSKDD LSTMSSAGFH 60 DRPAQRSAKR KRKNQFRGIR QRPWGKWAAE IRDPIKGFRV WLGTFNSAEE AARAYDVEAR 120 RIRGKKAKLN FPMEPTVPQK HHAPPVVPKV PKRSTTKEHS FVPAINNLAN KNASVYPSAD 180 FASKHPLGQP GNMPFVPVMN SLAPVEAPVI NMCSDRGSTS FGCSNLGWEY YTKTPHISAT 240 APISTIAEGD ESLLVKGNTN NSVVPPVMEN DAANFEPWIR YLMDDTVDQL IDSLLNFDVP 300 RDVAANFSKG TKPCISEQRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 75 | 134 | 5 | 65 | ATERF1 |
3gcc_A | 3e-20 | 75 | 134 | 5 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10017.3 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373186 | 0.0 | AK373186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023D24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 1e-154 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-114 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M0UDG0 | 0.0 | M0UDG0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10017.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-33 | ERF family protein |