PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046464.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 292aa    MW: 32188.2 Da    PI: 10.1438
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046464.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.48.9e-1430120186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           +W+++ + +L+ea  ++  +l+rg+l++++W+ev++++          +r+ +qCk++++ l+k+yk +k+   +     +s +p+f +
  HL.SW.v1.0.G046464.1  30 CWSEEATFTLVEAWGDRYLALKRGNLRQKHWQEVADAVnsdhcDGVRSRRTDIQCKNRIDTLKKKYKIEKTKVFESDGSYVSPWPFFAR 118
                           7*************************************888545555589*****************9999888777777889*****9 PP

              trihelix  85 le 86 
                           l+
  HL.SW.v1.0.G046464.1 119 LD 120
                           98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2428122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSDTGTPSP GTAPTARTTP FSSGGGREDC WSEEATFTLV EAWGDRYLAL KRGNLRQKHW  60
QEVADAVNSD HCDGVRSRRT DIQCKNRIDT LKKKYKIEKT KVFESDGSYV SPWPFFARLD  120
ALIGKNYPIS KVISPPATVV HRNPSPPSWA RYSPVPVGPR SATQKRSAPV PSPLPLATDY  180
SGSQRNFSVF AAAAVAALAE EADDEDTDRS GSRSSTGSGR RNREREPLYS GLAQAIERFG  240
EIYARVEAAK QRQMVQLQKI KRAKRSSETF PYAGVIASLN KFMHHLVLKS P*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104393.21e-126trihelix transcription factor ASIL1 isoform X1
TrEMBLA0A2P5B2U51e-135A0A2P5B2U5_PARAD; Sequence-specific DNA binding transcription factor
STRINGXP_010104393.11e-125(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-51sequence-specific DNA binding transcription factors