PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G046295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 409aa MW: 45803.8 Da PI: 8.7891 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.8e-17 | 123 | 168 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ HL.SW.v1.0.G046295.1 123 RGHWRPAEDAKLKELVTQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 168 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 9.5e-18 | 175 | 218 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ HL.SW.v1.0.G046295.1 175 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 218 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.33 | 118 | 169 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-14 | 122 | 171 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.73E-28 | 123 | 216 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-15 | 123 | 168 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 124 | 176 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.48E-13 | 126 | 167 | No hit | No description |
PROSITE profile | PS51294 | 27.228 | 170 | 224 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 174 | 222 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 175 | 217 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 177 | 223 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-7 | 186 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 409 aa Download sequence Send to blast |
MNLHHLKSDF DCFNGYQNMS FLSTQNPAPS PHLSHYKTTF GVSGETMDGD SRRSCEMGFQ 60 FLSSSSEKSK KTWVFPEQME SRGGGENKHK ISDLNVFDEI PETEEVRVRS TAGKNGHTKL 120 CARGHWRPAE DAKLKELVTQ YGPQNWNLIA ENLEGRSGKS CRLRWFNQLD PRINRRAFSE 180 EEEERLLAAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKHREQSNV YKRRRPSSTS 240 SSCSQILVPK VIDMTLTSNT NNASSTTEST ISNTINDHES ISTCTELSLT PSSNRSSAHH 300 NNHQGLFFTK FNPSSQQESQ LGLKDGSFDK LIGFYRIGQR GGVANKTVVR LDQSGQSDSN 360 SENSAADSVA TNRSINLTMF GPNQSQNSKD KEDIISLSFI DFLGVGAN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 123 | 223 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899736.1 | 1e-143 | transcription factor MYB56-like | ||||
TrEMBL | A0A2P5EK44 | 1e-179 | A0A2P5EK44_TREOI; MYB transcription factor | ||||
STRING | XP_010088473.1 | 1e-144 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-66 | myb domain protein 105 |