PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G046000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 401aa MW: 45292.2 Da PI: 7.0723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.4 | 4e-16 | 258 | 304 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRRd+iN+++ +L++l+P++ K++Ka+iL A++++k Lq HL.SW.v1.0.G046000.1 258 LHNLSEKRRRDKINKRIRTLKTLIPNC-----NKVDKASILDDAIDHLKTLQ 304 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.22E-17 | 252 | 308 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-19 | 253 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-18 | 253 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.784 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 258 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-17 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDSGFVELAW ENDEIVRRRP PSTFMLSQRN SNSSTTAAAA VAGGDYNDNS SSQGHTLSKK 60 RGSLRTHTTN NYCYQDNHQP NTTPTRNVFE LFSSPKQCNK LASNGGEDRH RARPVLLKDC 120 LNKSSSTFQD DHDRDLQPPM KIVNNKRPVQ PAHDNSMCLV PDDHDDRQNP TLDQPHQTYY 180 DYDYPQNQED AALVPSLNSV GASNDHHDHL PMTHNGRRHH STATTTTLDQ DEDEDHDHDQ 240 DQEQELQHNL SRKRSTKLHN LSEKRRRDKI NKRIRTLKTL IPNCNKVDKA SILDDAIDHL 300 KTLQFQLQMM SMGAGLNVMN PMMAQYLMSC FSPMAMAPVS PLVASRLGVQ MFGFPAVSSS 360 VSQTSQPSAS FMPWHVPVPP SPQIPRFQTP MNYYYSPQNN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 266 | RKRSTKLHNLSEKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5ETH2 | 1e-87 | A0A2P5ETH2_TREOI; Basic helix-loop-helix transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32294 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-16 | phytochrome interacting factor 3 |