PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045960.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 437aa    MW: 49748.2 Da    PI: 4.9162
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045960.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35141042101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye++e++ +++++sws++g sfvv++++ef+k++Lp yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+
  HL.SW.v1.0.G045960.1  14 FLTKTYELVEEPLTDNIVSWSQSGCSFVVWNPTEFSKDLLPMYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEDFIRGQ 93 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           ++ll++i+r+k
  HL.SW.v1.0.G045960.1  94 RHLLKNIHRRK 104
                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDGSQGSSTA PAPFLTKTYE LVEEPLTDNI VSWSQSGCSF VVWNPTEFSK DLLPMYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEDFI RGQRHLLKNI HRRKLIHSHS MQNQGNCAPL  120
TDPERYEYEK EIKRLKHEKN SLQLTLQMHE REKQEFELQK QALNQRFQTM EQRQMRLMAS  180
LAEIMQKPAF ASILMQQSDN HSKKRRLLSS SNHSDESNMD EISNWNPKDT NFDRMSAQTT  240
KFDPIEKLEG SIGFWESFLY RIGEEFNSVG VFSQVSPIID TEIEHVEVNC RSSSPMSHLS  300
SPNSFDVHSS PEAPDSANHL DIGNIFSVCL DVDMTPKSSG LDMNSSPACA IEVEASKEED  360
VGVTEALPTK VNDLFWEQCL TETPGSSDLH EIQPERNETE DSASGSQAAI HRADWWSMNS  420
NVNNIATQRG HLTSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27310319129Heat shock factor protein 1
5d5v_B3e-27310319129Heat shock factor protein 1
5d5v_D3e-27310319129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109197.10.0heat stress transcription factor A-4c
TrEMBLA0A2P5FFD20.0A0A2P5FFD2_TREOI; Heat shock transcription factor
STRINGXP_010109197.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.13e-89HSF family protein