PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045801.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 198aa    MW: 21338.4 Da    PI: 10.0855
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045801.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-232169149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k ie ksn+qvtfskRr g++ KA ELSvLC+ +vavi+fs++gkl+ +
  HL.SW.v1.0.G045801.1 21 KNIEKKSNKQVTFSKRRSGLFNKAGELSVLCGSNVAVIVFSPNGKLFCF 69
                          68********************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-311372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.6471373IPR002100Transcription factor, MADS-box
CDDcd002658.32E-361485No hitNo description
SuperFamilySSF554551.15E-271485IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-211535IPR002100Transcription factor, MADS-box
PfamPF003199.1E-242369IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-213550IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-215071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MASFEITKKK TTQGRQKIEI KNIEKKSNKQ VTFSKRRSGL FNKAGELSVL CGSNVAVIVF  60
SPNGKLFCFG HPSVDDVVHS YLNGTVALPH NNHTIATSST AASYVKAMTE LEEAEKKKKL  120
AVRQARLASL LEKNNGGGEG GSGGAWWAEP INEMGFQELE NHLGMLVDLR SKVSAVAGNK  180
VPALNSELGD WRLGLNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-161494280MEF2 CHIMERA
6byy_B3e-161494280MEF2 CHIMERA
6byy_C3e-161494280MEF2 CHIMERA
6byy_D3e-161494280MEF2 CHIMERA
6bz1_A3e-161494280MEF2 CHIMERA
6bz1_B3e-161494280MEF2 CHIMERA
6bz1_C3e-161494280MEF2 CHIMERA
6bz1_D3e-161494280MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094362.18e-47agamous-like MADS-box protein AGL61
TrEMBLA0A2P5CGN54e-52A0A2P5CGN5_TREOI; MADS-box transcription factor
STRINGXP_010094362.13e-46(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-23AGAMOUS-like 62