PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045672.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 414aa    MW: 47118.2 Da    PI: 4.1212
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045672.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix483.2e-15178260286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           Wt++e+ +L++a  e+  + ++++l+   W+ev++k++e  ++ r+ +qC+++++ l+k+ykk+k++++ +    +s+++yf++++
  HL.SW.v1.0.G045672.1 178 WTERETFVLLDAWGERFLQRGKKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKANSSMG---GTSKWSYFKKMD 260
                           *************************************762678***********************99986...6679*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-5139146IPR009057Homeodomain-like
PfamPF138372.6E-22177260No hitNo description
PROSITE profilePS500906.539178235IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.2E-5203244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDTEDDARY PPNPYGGNHH QGYGSSHRQK LPVQSGPYSR PVGDQYVDED DEEEDEDDEL  60
GEEEDDNDNG QNNGYPPVDK NVGDDEDDDD DDDDVEEEHE DEEDDENDEA EDEDHDKRQG  120
YDRKNDDEDL QRHPKKRKLI SLVSSYEFAP RVPSAPPSAA TASTARVSFG GRSSLTDWTE  180
RETFVLLDAW GERFLQRGKK SLRSEEWQEV AEKVSEVSKI DRTDTQCRNR LDTLKKKYKK  240
EKANSSMGGT SKWSYFKKMD LLLSTANQQP GLSCGMDSGE YVFMNPRVYL NCANGLDEMR  300
DSPGNSESEG SDDSDGLPPK KRRSGRDNDR DEESSFGLLA NTIHKFGEIY EKIEDSKRQQ  360
MAELEKMRMD FQRDLEVQRR QIIERAQAEI EKIQQGGDDD DDEIDDSAEN ASG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867549.11e-174trihelix transcription factor ASIL2-like
RefseqXP_015867557.11e-174trihelix transcription factor ASIL2-like
RefseqXP_024931905.11e-174trihelix transcription factor ASIL2-like
TrEMBLA0A2P5AF440.0A0A2P5AF44_TREOI; Myb-like domain containing protein
STRINGXP_010098044.11e-168(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-62Trihelix family protein